Imaging datasets

This section collects COVID-19 and pneumonia related chest x-ray datasets.

TorchXrayVision is a python library of chest X-ray datasets and models providing a standardized interface for some of the datasets listed below.

NamePublisherTypeImagesClassesDownload links
COVID-19 image data collectionJoseph Paul CohenChest x-ray / CT158 (updating)COVID-19, SARS, Viral Pneumonia, etc.http
NIH Clinical Center chest x-ray datasetsNational Institutes of HealthChest x-ray100,000+14 categories including pneumoniahttp; torrent: full224×224
BIMCV-COVID19BIMCV-PadChestMedical Imaging Bank of the Valencia RegionChest x-ray160,000+174 labels (no COVID-19 yet)http; torrent: full224×224
RSNA Pneumonia Detection ChallengeRadiological Society of North Americachest x-ray26,684pneumonia object detection bboxeskaggle (DICOM), torrent (jpeg)
CheXpertStanford Machine Learning Groupchest x-ray224,31614 categories including pneumoniahttp (registration needed)
MIMIC-CXR-JPGJohnson et al. (2019)chest x-ray300,000+14 categories including pneumoniahttp (credentialing needed)
Open-iNational Library of Medicinechest x-ray7,470http: pngDICOMlabels
COVID19 High quality imagestheroyakashChest x-ray338COVID-19, Viral Pneumonia / Normalkaggle
Chest X-Ray Images (Pneumonia)Paul MooneyPediatric chest x-ray5,863Pneumonia / Normalkaggle

Case datasets

ScopePublisherGranularityUpdatedFields1FormatDataset
International level
worldwideJohns Hopkins CSSEcountries2daily1, 2, 3csvlink
worldwideEuropean Centre for Disease Prevention and Controlcountriesdaily1, 3xlslink
Country level
CanadaCOVID-19 Canada Open Data Working Groupprovincesdaily1, 2, 3, 7Google Sheetslink
ItalyProtezione Civilenational, regional, provincesdailynr: 1, 2, 3, 4, 5, 6, 7; p: 1csv, jsonlink
United StatesThe COVID Tracking Projectstatesdaily1, 3, 7Google Sheets, csv, json, GraphQLlink

[1] Fields explanation:

  1. Positive cases
  2. Recovered cases
  3. Deaths
  4. Hospitalized patients
  5. Patients in intensive care unit
  6. Cases in home confinement
  7. COVID-19 tests made

[2] provinces for China, US, Canada, Australia

Epidemic data and models

Collection of case datasets for analyzing the dynamics of the outbreak.

Case datasets

ScopePublisherGranularityUpdatedFields1FormatDataset
International level
worldwideJohns Hopkins CSSEcountries2daily1, 2, 3csvlink
worldwideEuropean Centre for Disease Prevention and Controlcountriesdaily1, 3xlslink
Country level
CanadaCOVID-19 Canada Open Data Working Groupprovincesdaily1, 2, 3, 7Google Sheetslink
ItalyProtezione Civilenational, regional, provincesdailynr: 1, 2, 3, 4, 5, 6, 7; p: 1csv, jsonlink
United StatesThe COVID Tracking Projectstatesdaily1, 3, 7Google Sheets, csv, json, GraphQLlink

[1] Fields explanation:

  1. Positive cases
  2. Recovered cases
  3. Deaths
  4. Hospitalized patients
  5. Patients in intensive care unit
  6. Cases in home confinement
  7. COVID-19 tests made

Government pages

Official pages for monitoring the national outbreaks with reported cases. English version is provided, if found.

Americas

Asia

Australia and Oceania

Europe

Dashboards

Dashboards visualizing the dynamics of the outbreak in different geographic areas.

Worldwide

Country level

Statistical models

  • COVID-19 Dashboards – Extensive collection of dashboards, diagrams and other visualizations as well as statistical models of the COVID-19 outbreak.
  • COVID-19 Health System Capacity – Open geospatial work to support healthcare systems’ capacity in the United States.
  • Epidemic calculator – An interactive visual calculator demonstrating the relations between different epidemic variables.
  • COVID-19 Scenarios – A planning tool for COVID-19 outbreaks in communities across the world.

Selected scientific articles

A collection of scientific papers related to COVID-19 relevant from the data science point of view.

Medical imaging papers

Computer Tomography (CT) images

Epidemic papers

Estimating the proportion of asymptomatic cases and transmissibility

Clinical record analysis

Computational drug research

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